K-mer

K-mer counters

• jellyfish (memory intensive if I remember correctly)
• dsk (prefered i think)
• kmc (used by iMOKA, so possibly new fave?)
  • kmc2 or kmc3?

Tumor / Normal Comparisons

RNA DE-kupl

DNA 2-kupl

K-mer Analysis

• iMOKA - favored at the moment
• GECKO - SLOW
• HAWK - SLOW
• MetaGO