Foldseek

Compares protein structures

~/.local/foldseek/bin/foldseek databases



~/.local/foldseek/bin/foldseek databases PDB PDB tmpPDB/



~/.local/foldseek/bin/foldseek databases Alphafold/Swiss-Prot SwissProt tmpSwissProt



~/.local/foldseek/bin/foldseek createdb Homo_Sapiens_NOT_Herpesvirales.tsv Homo_Sapiens_NOT_Herpesvirales 




~/.local/foldseek/bin/foldseek easy-search Herpesvirales_NOT_Homo_Sapiens_cifs/*cif.gz Homo_Sapiens_NOT_Herpesvirales HerpesInHuman.html tmpFolder -e 1e-40 --format-mode 3